5 Best Ways to Return the Maximum Value of an Array While Ignoring NaNs in Python

πŸ’‘ Problem Formulation: When handling arrays with numeric values in Python, it’s commonplace to encounter NaN (Not a Number) elements, especially when working with datasets in scientific computing or machine learning. The challenge is to calculate the maximum value of an array that may include negative infinity and NaN values, disregarding the NaNs and treating them as if they don’t exist. For example, if we have an input array like [NaN, -inf, 3, 5], the desired output would be 5.

Method 1: Using NumPy’s nanmax Function

The nanmax function from the NumPy library is designed to handle arrays with NaN values efficiently. It ignores all NaN values and computes the maximum value in the array. If the array contains negative infinity, it is also considered, but NaNs are excluded from the computation.

Here’s an example:

import numpy as np

array = [np.nan, -np.inf, 3, 5]
max_value = np.nanmax(array)
print(max_value)

The output of this code snippet:

5.0

This code snippet first imports the NumPy library and creates an array that includes a NaN and negative infinity. The nanmax function is then called on this array, which calculates the maximum value while ignoring NaN values, resulting in 5.0 as the maximum.

Method 2: Filtering NaNs with a List Comprehension

For those who prefer not to rely on external libraries like NumPy, a list comprehension can be used to remove NaN values from the array before using the built-in max function to find the largest value. This approach requires a bit more code but uses only Python’s standard library.

Here’s an example:

import math

array = [float('nan'), float('-inf'), 3, 5]
filtered_array = [x for x in array if not math.isnan(x)]
max_value = max(filtered_array)
print(max_value)

The output of this code snippet:

5

This snippet employs a list comprehension to filter out NaN values, using the math.isnan() function to check for the presence of NaNs. Once the list is clean, the built-in max function finds the maximum value, which is then printed out.

Method 3: Using pandas’ Series.max

The pandas library, commonly used for data manipulation, provides a Series.max method that can ignore NaN values when calculating the maximum. This is highly effective when working with data in pandas Series format.

Here’s an example:

import pandas as pd

array = [pd.NA, float('-inf'), 3, 5]
series = pd.Series(array)
max_value = series.max()
print(max_value)

The output of this code snippet:

5

By creating a pandas Series from the array and using the max method, this code effectively ignores any NaN or NA (pandas’ own missing value marker) and computes the maximum of the remaining values.

Method 4: Using filter and reduce

Python’s filter function combined with functools.reduce can achieve the same result. filter can exclude NaN values from the array and reduce can apply a cumulative operation to find the maximum value.

Here’s an example:

from functools import reduce
import math

array = [math.nan, float('-inf'), 3, 5]
filtered_array = filter(lambda x: not math.isnan(x), array)
max_value = reduce(lambda a, b: a if a > b else b, filtered_array)
print(max_value)

The output of this code snippet:

5

The lambda function inside filter removes any NaN values from the array. Then the reduce function with a lambda expression iterates through the filtered array and returns the maximum value.

Bonus One-Liner Method 5: Using List Comprehension with max and isnan

If brevity is key, a one-liner using list comprehension, max, and math.isnan combines filtering and finding the maximum elegantly.

Here’s an example:

import math

array = [math.nan, float('-inf'), 3, 5]
max_value = max(x for x in array if not math.isnan(x))
print(max_value)

The output of this code snippet:

5

In this concise one-liner, the list comprehension syntax is used directly within the max function call to filter out NaN values and compute the maximum in a single step.

Summary/Discussion

  • Method 1: NumPy’s nanmax. Strengths: Very straightforward and efficient, especially for those who already use NumPy in their workflow. Weaknesses: Requires the NumPy library, which might be considered heavy for simple tasks.
  • Method 2: List Comprehension with max. Strengths: Doesn’t rely on external libraries and is quite readable. Weaknesses: Might be less efficient with very large arrays compared to NumPy.
  • Method 3: pandas’ Series.max. Strengths: Ideal for data stored in pandas Series and integrates well with data analysis workflows. Weaknesses: Overkill if pandas is not already being used.
  • Method 4: filter and reduce. Strengths: Functional programming-inspired method that is very Pythonic. Weaknesses: Can be less intuitive for those not familiar with these concepts.
  • Bonus Method 5: One-Liner. Strengths: Extremely concise. Weaknesses: Readability may suffer for those not familiar with list comprehensions.